PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID EMT28664
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Aegilops
Family WRKY
Protein Properties Length: 501aa    MW: 52346.4 Da    PI: 6.6461
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
EMT28664genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.11.2e-30231289259
               --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
      WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +++++tYeg+Hnh+
  EMT28664 231 ADGCQWRKYGQKMAKGNPCPRAYYRCTMAtGCPVRKQVQRCAEDRTILITTYEGTHNHP 289
               7***************************99****************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081128.461225291IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.6E-31226291IPR003657WRKY domain
SuperFamilySSF1182905.1E-27229291IPR003657WRKY domain
SMARTSM007741.3E-36230290IPR003657WRKY domain
PfamPF031066.1E-27232289IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0016036Biological Processcellular response to phosphate starvation
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080169Biological Processcellular response to boron-containing substance deprivation
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 501 aa     Download sequence    Send to blast
MDKGHLGGGG GGGGLLALDA SPRQLGFLNL LSPAPFHRSM EADDGGGGGG GRGRRSIEVD  60
FFSDEKKNMK KSRASAGADA DDHKDQASAA GLAIKKEDLT INLLPGNNTR SDRSMVVDDD  120
GASRADEDRN GRNTGELAAM QAELSRMNEE NQRLRGMLTQ VNNSYHALQM HLVALMQQRT  180
QMPPVQPQQP PTQEDGKNES AIVPRQFLGL GPSGASADVA EEPSNSSTEI ADGCQWRKYG  240
QKMAKGNPCP RAYYRCTMAT GCPVRKQVQR CAEDRTILIT TYEGTHNHPL PPAAMAMAST  300
TSAAASMLLS GSMPSADGAG LMSSNFLART VLPCSSSMAT ISASAPFPTV TLDLTHAPPG  360
APNAMPLNVA RPHAPGQFHV PMPGGGMAPA FAMPPHMLYN QSKFSGLQMS SDSVDAGQFA  420
QPRPPMGLPG QLSDTVSAAA GAITADPNFT VALAAAISSI MAGQHAAGNS NANNSNNNTS  480
NNNVMTTSNN TTSNNTNSET Q
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-212302931476WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00209DAPTransfer from AT1G62300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574520.0AK357452.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1053M21.
GenBankAK3648000.0AK364800.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2028I03.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003566323.10.0PREDICTED: probable WRKY transcription factor 31
SwissprotQ9C5198e-81WRKY6_ARATH; WRKY transcription factor 6
TrEMBLM8C3480.0M8C348_AEGTA; Uncharacterized protein
STRINGMLOC_68299.20.0(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP52653656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62300.18e-69WRKY family protein